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Connecting Flights and Missed Connections: Who Pays?

Understand who pays when you miss a connecting flight and how booking type affects your rights.

17 December 2025

The one factor that determines everything

When a missed connection leaves you stranded at an unfamiliar airport, the first question is always: who is responsible? The answer depends almost entirely on a single factor that most passengers never think about until something goes wrong. Were your flights booked as a single reservation, or as separate, independent bookings?

This distinction is the dividing line between having clear legal protection under EC261 and having almost none at all. The regulation treats these two scenarios completely differently, and airlines know it. Understanding which side you fall on before you travel can save you hours of frustration and potentially hundreds of euros.

Single Booking (One PNR) Separate Bookings
Airline is responsible for the entire journey
Each airline is only responsible for its own flight
Delay measured at final destination
No connection protection whatsoever
Airline must rebook you if you miss the connection
You must buy a new ticket at your own expense
Full EC261 compensation applies
Can only claim for the individual delayed flight
Duty of care (meals, hotel) at connecting airport
No duty of care from the second airline

Single booking: you are protected

When all your flights are on one reservation, with a single booking reference (PNR), the airline or alliance that sold you the ticket takes responsibility for the entire journey from origin to final destination. If your first flight is delayed and you miss the connection, the airline must rebook you on the next available flight and provide meals and accommodation while you wait.

Crucially, compensation under EC261 is calculated based on your arrival delay at the final destination, not the connecting airport. This means a 90-minute delay on your first leg that causes you to miss a connection, ultimately arriving 5 hours late at your destination, entitles you to full compensation based on that 5-hour delay.

The Court of Justice of the European Union confirmed this principle in the Wegener ruling. The court held that passengers on a single booking who miss connections are entitled to compensation based on the delay at the final destination, even when the connecting flight is operated by a different airline within the same booking. This applies to codeshare arrangements and alliance partner connections alike, provided they are on one reservation.

The Wegener ruling

The CJEU confirmed that for flights booked as a single reservation, the operating carrier of the delayed first leg can be held liable for compensation based on the total delay at the final destination. This applies even when different airlines operate different legs of the journey.

Separate bookings: you carry the risk

If you booked two independent flights yourself, creating two separate reservations with two different booking references, the situation changes dramatically. Each airline is responsible only for its own flight. If the first flight lands late and you miss the second, the first airline owes you nothing for the missed connection. The second airline has no obligation to rebook you, because from their perspective, you simply did not show up.

This means you would need to buy a new ticket for the onward journey out of your own pocket. You might be able to claim compensation from the first airline for the delay on their flight, but only if that individual flight arrived 3 or more hours late. The knock-on consequences of missing your second flight are entirely your problem.

The self-transfer trap

Some online travel agencies stitch together separate tickets from different airlines and present them as a single itinerary. Sites like Kiwi.com are particularly known for this practice, sometimes called "virtual interlining." These are NOT single bookings. If you miss your connection, neither airline is responsible for the other's flight. The OTA may offer a "guarantee" product, but that is the agency's own insurance policy with its own terms and limitations. It is not your EC261 right.

How to verify your booking type

Not sure whether your flights are on a single booking or separate ones? There are several reliable ways to check before you travel. Getting this right is essential because it determines your rights if anything goes wrong.

  • You have one booking reference (PNR) that covers all flights
  • Your boarding passes show the same booking reference throughout
  • Your luggage is checked through to the final destination
  • You booked directly with the airline or through a travel agent who issued a single ticket
  • You have multiple booking references for different legs
  • The OTA confirmation shows separate ticket numbers for each flight
  • You were told to collect and re-check luggage at the connecting airport
  • You booked through a site advertising self-transfer or virtual interlining

If any of the warning signs apply, treat your flights as separate bookings and plan accordingly. Allow extra time at connecting airports, and understand that you bear the financial risk if something goes wrong with the first leg.

Codeshare flights: who do you claim against?

Codeshare flights add another layer of complexity. Your ticket might show a KLM flight number, but the aircraft, crew, and operations belong to Delta. In this scenario, your EC261 claim goes to the operating carrier, not the marketing carrier whose code appears on your ticket.

This distinction matters because the operating carrier is the airline that actually caused (or prevented) the disruption. If you booked a British Airways code on a flight operated by Iberia, and the flight was delayed, your claim is against Iberia. British Airways will simply redirect you, adding weeks to the process if you contact the wrong airline first.

Check your boarding pass or the airport departure board for the "operated by" line. That is the airline you need to claim against.

Practical advice for connecting journeys

The simplest way to protect yourself is to book connections through the airline directly, on a single reservation. When the airline offers you a connection, they are taking responsibility for it. When you build your own itinerary from separate tickets, you are accepting the risk yourself.

If separate bookings are unavoidable, build in generous buffer time. A minimum connection of 3-4 hours gives you a cushion against moderate delays. For international connections requiring passport control and terminal changes, allow even more. And always have a contingency plan: know what flights depart later that day, and understand the cost of rebooking before you commit to a tight schedule.

Missed your connection?

Enter your flight details to find out what you may be owed.

Check Your Flight

Passenger

J. SMITH

Flight

BA 2761

LHR

London

BCN

Barcelona

DATE 15 MAR
SEAT 14A
GATE B22
BOARDING 13:40

STATUS

3H DELAY

Passenger

M. JOHNSON

Flight

KL 1009

AMS

Amsterdam

FCO

Rome

DATE 22 JAN
SEAT 7F
GATE A15
BOARDING 09:50

STATUS

CANCELLED

Connecting flights are a normal part of air travel, and airlines build their entire hub-and-spoke business model around them. When those connections fail because of delays the airline caused, the passenger should not be the one paying the price. If your flights were on a single booking and you arrived at your final destination more than 3 hours late, the law is on your side.

Claim your compensation

Flight delayed or cancelled? You could be entitled to up to €600.

Check Your Flight
Connecting Flights and Missed Connections: Your Rights | EU261 Claim | EC261 Claim